PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_10.75
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 307aa    MW: 34479.8 Da    PI: 6.521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_10.75genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28e-29154213159
                                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                  ++Dgy WrKYGqK+ ++++ pr+YY+C+ a +Cpvkkkv+rs ed++v++ tYegeH+h+
  evm.model.supercontig_10.75 154 VKDGYLWRKYGQKVTRDNPSPRAYYKCALApSCPVKKKVQRSIEDQSVIVATYEGEHTHP 213
                                  58**************************999****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-27149214IPR003657WRKY domain
PROSITE profilePS5081125.775149215IPR003657WRKY domain
SuperFamilySSF1182901.27E-24150214IPR003657WRKY domain
SMARTSM007743.5E-32154214IPR003657WRKY domain
PfamPF031062.5E-23155213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVMDLSFSPL RSTASLDLNV NPDLREDELV VPPKEYLESA EFMELQRKLS EKPNHHDERG  60
ELMEEMDRLS TENKELSQMI TVMCENYNSL RKQMVDFVNE KKRKSDQSST QSSSTDDNGS  120
WNKRLKEDDP GAIKEPKIST VYVKTHPFDT SLIVKDGYLW RKYGQKVTRD NPSPRAYYKC  180
ALAPSCPVKK KVQRSIEDQS VIVATYEGEH THPMEATPSS NVRSGSAGSA GKQGGRTMTM  240
DLTRSTTSRL NKGMLGRTMD ETPQQLQQML VDHMASSLTN DPKFTAAIAA AFSENMHEGI  300
NINPPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-191532141373WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067500.15e-79PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH71e-73WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLA0A140H8T39e-88A0A140H8T3_MANES; WRKY transcription factor 79
STRINGPOPTR_0001s03620.11e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-68WRKY DNA-binding protein 40